Whole Exome sequencing for the 1000 Genomes Project - SRA

SRX103760: Whole Exome sequencing for the 1000 Genomes Project
6 ILLUMINA (Illumina HiSeq 2000) runs: 17.8M spots, 2.9G bases, 1.9Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population

Sample: Coriell HG02025

Library:

Name: Catch-88584

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward barcode

Group tag	Basecalls
tagged_851	TCCAGCAA

85 reverse

BI GSSR sample ID: 120518.0 
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MSH 
BI project name: C469 
BI work request ID: 26159 

Name	Step	Program	Version
base caller	2011-09-10 08:48:19.0	GAPipeline	RTA1.12.4.2

Runs: 6 runs, 17.8M spots, 2.9G bases, 1.9Gb

Run	# of Spots	# of Bases	Size	Published
SRR359188	3,074,170	491.9M	336.3Mb	2011-10-29
SRR359201	2,950,468	472.1M	322.9Mb	2011-10-29
SRR359205	3,096,493	495.4M	340.5Mb	2011-10-29
SRR360034	2,968,082	474.9M	325.1Mb	2011-10-31
SRR361100	2,976,365	476.2M	324.1Mb	2011-11-04
SRR361103	2,778,181	444.5M	297.4Mb	2011-11-04

Supplemental Content

Gdi1 protein, partial [Tricholoma sp. 26 XXD-2021]
Gdi1 protein, partial [Tricholoma sp. 26 XXD-2021]
gi|2288963963|gb|UVH37839.1|

Protein
Rattus norvegicus niban apoptosis regulator 1 (Niban1), mRNA
Rattus norvegicus niban apoptosis regulator 1 (Niban1), mRNA
gi|15011896|ref|NM_022242.2|

Nucleotide
Homo sapiens cell-line MDA-MB-453 androgen receptor mRNA, complete cds
Homo sapiens cell-line MDA-MB-453 androgen receptor mRNA, complete cds
gi|5639998|gb|AF162704.1|

Nucleotide
Biopsy, Large-Core Needle
Biopsy, Large-Core Needle
The use of needles usually larger than 14-gauge to remove tissue samples large enough to retain cellular architecture for pathology examination.<br/>Year introduced: 2013

MeSH

Your browsing activity is empty.

Activity recording is turned off.

SRA